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Publications

Year	Title	Journal	Authors (First, Last)	PMID
2023	Single-Nucleotide Variant Calling in Single-Cell Sequencing Data with Monopogen	Nat Biotechnol	Dou J, Chen K	37592035
2023	Dimeric P53 Mutant Elicits Unique Tumor-Suppressive Activities through an Altered Metabolic Program	Cancer Discov	Gencel-Augusto J, Guillermina L	37067911
2023	Targeting T Cell Checkpoints 41bb and Lag3 and Myeloid Cell Cxcr1/Cxcr2 Results in Antitumor Immunity and Durable Response in Pancreatic Cancer	Nat Cancer	Gulhati P, DePinho, R	36585453
2023	A Spatially Resolved Single-Cell Genomic Atlas of the Adult Human Breast	Nature	Kumar T, Navin, NE	37380767
2023	Reconstructing Mutational Lineages in Breast Cancer by Multi-Patient-Targeted Single-Cell DNA Sequencing	Cell Genom	Leighton J, Navin NE	36777188
2023	Overcoming Adaptive Resistance to Anti-VEGF Therapy by Targeting Cd5l	Nat Commun	LaFargue C, Sood A	37100807
2023	Anaplastic Transformation in Thyroid Cancer Revealed by Single-Cell Transcriptomics	J Clin Invest	Lu LJ, Gao R	37053016
2023	Phosphorylated Nuclear Dicer1 Promotes Open Chromatin State and Lineage Plasticity of At2 Tumor Cells in Lung Adenocarcinomas	Sci Adv	Reyes-Castro RA, Arur S	37494452
2023	Archival Single-Cell Genomics Reveals Persistent Subclones During DCIS Progression	Cell	Wang K, Navin NE	37586362
2022	Mesenchymal and Stem-Like Prostate Cancer Linked to Therapy-Induced Lineage Plasticity and Metastasis	Cell Rep	Han H, Giancotti. F	35385726
2022	Genomic Analysis Defines Clonal Relationships of Ductal Carcinoma in Situ and Recurrent Invasive Breast Cancer	Nat Genet	Lips EH, Sawyer E	35681052
2022	Single-Cell Sequencing Reveals Trajectory of Tumor-Infiltrating Lymphocyte States in Pancreatic Cancer	Cancer Discov	Schalck AD, Bernatchez C	35849783
2022	EGFR Is a Master Switch between Immunosuppressive and Immunoactive Tumor Microenvironment in Inflammatory Breast Cancer	Sci Adv	Wang X, Ueno N	36525493
2022	Spatial Charting of Single-Cell Transcriptomes in Tissues	Nat Biotechnol	Wei R, Navin NE	35314812
2022	Spatial Intra-Tumor Heterogeneity Is Associated with Survival of Lung Adenocarcinoma Patients	Cell Genom	Wu HJ, Michor F	36419822
2021	Delineating Copy Number and Clonal Substructure in Human Tumors from Single-Cell Transcriptomes	Nat Biotechnol	Gao R, Navin NE	33462507
2021	Breast Tumours Maintain a Reservoir of Subclonal Diversity During Expansion	Nature	Minussi DC, Navin NE	33762732
2021	Medalt: Single-Cell Copy Number Lineage Tracing Enabling Gene Discovery	Genome Biol	Wang F, Chen K	33622385
2021	Simple Oligonucleotide-Based Multiplexing of Single-Cell Chromatin Accessibility	Mol Cell	Wang K, Navin NE	34686316
2020	Advancing Cancer Research and Medicine with Single-Cell Genomics	Cancer Cell	Lim B, Navin NE	32289270
2020	Relative Abundance of Sars-Cov-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract	Genes	Lee JJ, Maitra A	32545271
2020	P53 Drives a Transcriptional Program That Elicits a Non-Cell-Autonomous Response and Alters Cell State in Vivo	Proc Natl Acad Sci	Moyer SM, Lozano G	32900967
2019	Scopit: Sample Size Calculations for Single-Cell Sequencing Experiments	BMC Bioinformatics	Davis A, Navin NE	31718533

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