Publications
View Dr. Li's full publications list on Google Scholar.
Muyas F, M. Sauer CM, Valle-Inclán JE, Li R, Rahbari R, Mitchell TJ, Hormoz S, Cortés-Ciriano I. De novo detection of somatic mutations in high-throughput single-cell profiling data sets. Nature Biotechnology. 2023 Jul 6; Online ahead of print. doi: 10.1038/s41587-023-01863-z
Li R, Ferdinand JR, Loudon KW, Bowyer GS et al. Mapping-single cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. Cancer Cell. 2022 Dec 12;40(12):1583-1599.
Liu X*, Jin S*, Hu S*, Li R, Pan H, Liu Y et al. Single-cell transcriptomics links malignant T cells to the tumor immune landscape in cutaneous T cell lymphoma. Nature Communications. 2022 Mar 3;13(1):1158.
Reichart D*, Lindberg EL*, Maatz H*, …, Li R et al. Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies. Science. 2022 Aug 5;377(6606):eabo1984.
Li R*, Di L*, Li J*, Fan W* et al. A body map of somatic mutagenesis in morphologically normal human tissues. Nature. 2021 Sep;597(7876):398-403.
Jin S*, Li R*, Chen M*, Yu C*, Tang L* et al. Single-cell transcriptomic analysis defines the interplay between tumor cells, viral infection, and the microenvironment in nasopharyngeal carcinoma. Cell Research. 2020 Nov;30(11):950-965.
Li R*, Du Y*, Chen Z*, Xu D*, Lin T* et al. Macroscopic somatic clonal expansion in morphologically normal human urothelium. Science. 2020 Oct 2;370(6512):82-89.
Wang X*, Lu Y*, Song Y*, Dong J*, Li R, Wang G, Wang X et al. Integrative genomic study of Chinese clear cell renal cell carcinoma reveals features associated with thrombus. Nature Communications. 2020 Feb 6;11(1):739.
Fujimaki K*, Li R*, Chen H, Croce KD, Zhang HH, Xing J, Bai F, Yao G. Graded regulation of cellular quiescence depth between proliferation and senescence by a lysosomal dimmer switch. Proceedings of the National Academy of Sciences. 2019 Nov 5;116(45):22624-22634.
Su Z*, Wang Z*, Ni X*, Duan J*, Gao Y*, Zhuo M, Li R, Zhao J et al. Inferring the evolution and progression of small-cell lung cancer by single-cell sequencing of circulating tumor cells. Clinical Cancer Research. 2019 Aug 15;25(16):5049-5060.
Xue R*, Chen L*, Zhang C*, Fujita M*, Li R, Yan S et al. Genomic and transcriptomic profiling of combined hepatocellular and intrahepatic cholangiocarcinoma reveals distinct molecular subtypes. Cancer Cell. 2019 Jun 10;35(6):932-947.
Du Y*, Li R*, Chen Z*, Wang X, Xu T, Bai F. Mutagenic factors and complex clonal relationship of multifocal urothelial cell carcinoma. European Urology. 2018 May;71(5):841–843.
Li Z*, Li S*, Li R*, Zhu H*, Liu X* et al. Leukaemic alterations of IKZF1 prime stemness and malignancy programs in human lymphocytes. Cell Death & Disease. 2018 May 1;9(5):526.
Li R*, Li X*, Xue R*, Yang F* et al. Early metastasis detected in patients with multifocal pulmonary ground-glass opacities (GGOs). Thorax. 2018 Mar;73(3):290-292.
Chen X*, Zhong Q*, Liu Y*, Yan S*, Chen Z*, Jin S*, Xia T, Li R, Zhou A et al. Genomic comparison of esophageal squamous cell carcinoma and its precursor lesions by multi-region whole-exome sequencing. Nature Communications. 2017 Sep 12;8(1):524.
Xue R*, Li R*, Guo H*, Guo L* et al. Variable intra-tumor genomic heterogeneity of multiple lesions in patients with hepatocellular carcinoma. Gastroenterology. 2016 Apr;150(4):998-1008.
* indicates co-first author